Table 2 Examples of DEGs involved in the hypocrellin biosynthesis, transport and transcription factors (TFs) of Shiraia sp. S9 by SNP
Unigene ID | Up/down | Fold changea | Description |
|---|---|---|---|
Hypocrellin biosynthesis | |||
 1. Laccase-like multicopper oxidase (MCO) | |||
  TRINITY_DN31904_c0_g1_i4 | Up | 32.8 | Multicopper oxidases [KOG1263] |
  TRINITY_DN31904_c0_g1_i2 | Up | 21.18 | Multicopper oxidases [KOG1263] |
 2. Polyketide synthase (PKS) | |||
  TRINITY_DN73347_c0_g1_i1 | Up | 63.84 | Iterative polyketide synthase CazM [A0A0K0MCJ4.1] |
  TRINITY_DN73250_c0_g1_i1 | Up | 7.18 | Conidial yellow pigment biosynthesis polyketide synthase [Q03149.2] |
 3. O-methyltransferase (Omef) | |||
  TRINITY_DN28714_c0_g2_i1 | Up | 7.74 | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [KOG3178] |
  TRINITY_DN32187_c0_g1_i3 | Up | 4.49 | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [KOG3178] |
 4. FAD/FMN-dependent oxidoreductase (FAD) | |||
  TRINITY_DN33725_c0_g1_i8 | Up | 23.27 | FAD dependent oxidoreductase [OAL49443.1] |
  TRINITY_DN64473_c0_g1_i1 | Up | 4.7 | Uncharacterized FAD-linked oxidoreductase ARB_02478 [D4AS41.2] |
 5. Hydroxylase (Hyd) | |||
  TRINITY_DN84020_c0_g1_i1 | Up | 124.71 | Phenol hydroxylase [KMK58601.1] |
  TRINITY_DN13072_c0_g1_i1 | Up | 18.1 | Alkane hydroxylase 1 [Q9Y757.2] |
 6. Monooxygenase (Mono) | |||
  TRINITY_DN25739_c0_g1_i1 | Up | 20.83 | FAD-dependent monooxygenase andF [G3Y424.1] |
  TRINITY_DN31508_c0_g2_i1 | Up | 15.56 | Cytochrome P450 CYP2 subfamily [KOG0156] |
 7. Fasciclin (Fas) | |||
  TRINITY_DN43991_c0_g1_i1 | Up | 2.93 | Fasciclin and related adhesion glycoproteins [KOG1437] |
Hypocrellin transport | |||
 1. Major facilitator superfamily (MFS) | |||
  TRINITY_DN33647_c1_g1_i8 | Up | 43.12 | Major facilitator superfamily [KOG0255] |
  TRINITY_DN6606_c0_g1_i1 | Up | 37.62 | MFS quinate transporter-like protein QutD [OAL06848.1] |
 2. ATP-binding cassette transporter (ABC) | |||
  TRINITY_DN73211_c0_g2_i1 | Up | 2.60 | ABC superfamily [KOG0065] |
  TRINITY_DN30218_c0_g1_i2 | Down | 2.47 | ABC superfamily [KOG0055] |
 3. Metabolite transport protein (MTP) | |||
  TRINITY_DN30127_c0_g1_i1 | Up | 4.02 | Secondary metabolites biosynthesis, transport and catabolism [KOG0222] |
  TRINITY_DN25695_c4_g2_i1 | Up | 2.23 | Secondary metabolites biosynthesis, transport and catabolism [KOG1208] |
Transcription factors (TFs) | |||
 1. ERF | |||
  TRINITY_DN31904_c0_g1_i4 | Up | 5.04 | Hypothetical protein SNOG_06494 [XP_001796864.1] |
  TRINITY_DN31580_c0_g1_i1 | Up | 4.67 | Hexose transporter-like protein [OAK96729.1] |
 2. C3H | |||
  TRINITY_DN33456_c0_g1_i1 | Up | 2.36 | P-loop containing nucleoside triphosphate hydrolase protein [OAG15388.1] |
  TRINITY_DN31301_c0_g1_i7 | Up | 2.02 | ATP binding [KZM25621.1] |
 3. MYB | |||
  TRINITY_DN33687_c0_g1_i33 | Up | 7.01 | U4/U6-associated splicing factor PRP4 [KOG0670] |
  TRINITY_DN33611_c1_g2_i5 | Up | 6.67 | ATP-dependent RNA helicase MSS116 [OAL02684.1] |
 4. NAC | |||
  TRINITY_DN33640_c0_g1_i50 | Down | 8.87 | Hypothetical protein IQ06DRAFT_327513 [OAK97976.1] |
  TRINITY_DN33640_c0_g1_i25 | Down | 8.48 | Hypothetical protein SNOG_15601 [XP_001805746.1] |
 5. C2H2 | |||
  TRINITY_DN28764_c0_g1_i5 | Down | 2.74 | Acetyl-CoA synthetase-like protein [OAL06367.1] |
  TRINITY_DN28413_c0_g1_i2 | Down | 2.61 | Hypothetical protein SNOG_13514 [XP_001803722.1] |
 6. bHLH | |||
  TRINITY_DN33276_c0_g1_i17 | Down | 7.94 | Aldehyde dehydrogenase [OAK94834.1] |
  TRINITY_DN33276_c0_g1_i28 | Down | 6.32 | Aldehyde dehydrogenase [OAK94834.1] |